PHP programmers don't really understand PHP.
They know how to use PHP - but they hardly know how it works, mainly because it Just Works most of the time. But such wilful ignorance (otherwise known as abstraction) often runs them aground on some issues when their code meets the stupidity that is APC. Bear with me while I explain how something very simple about PHP - how includes work.
Every single include that you do in PHP is evaluated at runtime. This is necessary so that you could technically write an include inside an if condition or a while loop and have it behave as you would expect. But executing PHP in Zend is actually a two step process - compile *and* execute, of which APC gets to handle only the first.
Compilation: Compiling a php file gives a single opcode stream, a list of functions & yet another list of classes. The includes in that file are only processed when you actually execute the code compiled. To simplify things a bit, take a look at how the following code would be executed.
<?php return; include_once "a.php"; ?>
The PHP compiler does generate an instruction to include file "a.php", but since the engine never executed it, no error is thrown for the absence of a.php. Having understood how includes work, classes & OOP face a unique problem during compilation.
<?php include_once "parent.php"; class Child extends Parent { } ?>
Even though the class Child is created at compile time, its parent class is not available in the class table until the include instruction is actually executed & the parent.php compiled up. So, php generates a runtime class declaration which is an actual pair of opcodes.
ZEND_FETCH_CLASS :1, 'Parent' ZEND_DECLARE_INHERITED_CLASS null, '<mangled>', 'child
But what if the class parent was already in the class table when the file was being compiled? Like the following index.php
include_once "parent.php"; include_once "child.php"; $a = new Child();
Since obviously the parent class is already compiled & ready, Zend does something intelligent by removing the two instructions and replacing them by NOPs. That makes for fewer opcodes and therefore faster execution.
Here's the kicker of the problem. Which of these versions should APC cache? Obviously, the dynamically inherited version is valid for both cases - but APC caches whatever it encounters initially. The static version is obviously incompatible in a dynamic scenario.
So whenever APC detects that it has cached a static version, but this case actually requires a dynamic version, it decides to not cache that file *at* all from that point onwards. That's what the APC autofiltering does.
Now, you ask - how could it appear in perfectly normal code?
Assume child1 and child2 inherits from parent class. And here is how the first hit on index.php looks like from an inclusion perspective. Now, it is obvious that the child2 in this case is actually compiled with the faster static inheritance (marked in orange) while child1 suffers the performance hit of not having Parent available till execution time.
Then we have a profile.php which only requires the child2 class. But while executing this file, APC fetches the copy of child2.php which was in cache - which is the statically inherited one.
As you could've guessed, the cached version is not usuable for this case - and APC drops it out of cache. And for all requests henceforth, even for the index.php case, APC actually ignores the cached version and insists on compiling the file with Zend. If you enable apc.report_autofilter, this information will be printed out into the server error log.
Part of the culprit here is the conditional inclusion using include_once. With mere includes, you get an error whenever parent.php is included multiple times - but that can be annoying too. Where include_once/require_once can be debugged with Inclued, userspace hacks like the rinclude_once or !class_exists() checks make it really hard for me to figure out what's going wrong.
So, if you write One File per Class PHP and use such methods of inclusion, be prepared to sacrifice a certain amount of performance by doing so.
--Doubt is not a pleasant condition, but certainty is absurd.
-- Voltaire